Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015907248.1_cds_XP_016457385.1_51117
CDS Infomation

[gene=LOC107781227] [db_xref=GeneID:107781227] [protein=phytoene dehydrogenase, chloroplastic/chromoplastic-like] [protein_id=XP_016457385.1] [location=58794..60263] [gbkey=CDS]
Sequence

ATGCCGCCGTGTCTTTGTCTCCCCGCCACTCACTCTCTCCCCTCCTCAAACCTTCTCATC
TCCACGCGCCACCGCTTTCGACTCCCTAAACCGCCGAATGCTTCTTCACAGATATCCCTG
AACTCGCCATTATCCAATCAAACCTCACCCCCTCAGCCTAAAACAACCGGAGTCATTGTT
ATTGGCGGTGGCTTAGCTGGCTTAGCAGCTGCAACTCGGCTTCAAGCCGATAATGTCCCA
TTTCTACTTCTCGAAGCTTCTGACGCCGTTGGCGGCCGTGTTCGCTCTGACGTAGTCGAC
GGTTATATCCTCGATCGTGGTTTCCAGATTTTCATTACTGGTTACCCTGAAGCTCGAAAA
ATCCTTGACTATGACGCCTTAGACCTCAGAAAATTCTACTCTGGGGCTCAGGTTTACTAC
GGTGGTCGCTTCAACACCGTTGCTGACCCTCTCCGTCACTTCTCCGATTCTCTGCAATCT
CTAACTAACCCAATCGGTACAGTTGTGGATAAATTACTTATCGGATTGACTAGATTAAAA
GTTTTGACTCAAGGAGATGATGAGATATTGAATGCTGAAGAAGTTACTACTATTGATTTA
CTGAAAAAGATCGGTTTTTCGGATGCAATATTAGATAGGTTTTTTCAACCTTTTTTTGGC
GGGATTTTCTTCGATAGAGAGCTTGAAACGACGTCGCGGCTGTTCAATTTCATCTTCAAG
TGCCTAGCTCTAGGTGACAACACACTTCCGGCGAAGGGCATTGCTGCGATTCCGGAACAA
TTGGCGGCGAAATTGCCGTCGAATTCGATACTGTTGAATTCACCAGTCGTTTCCGTTGAT
TCAGAATCGAATTCGAGCTCAAGAATAAGGGTGAAATTACTAAATGGAGAAATTTTGGAA
AGTGAATTTGGGATAATAGTGGCAGTTGAAGAGCCTGAGGCAGTTAAGTTATTGGCGGGG
AAAATGGCTGGAGAAAAAACAGCTGAGGTTCGACAACCGGTTCGGAGCACCGTTTGTTTG
TATTTTTCAGCTGACCAAGACAAAGTTCCGGTTCGGGACCCGGTTCTGCTTCTTAACGGG
ACGGATAAAGGGATAATCAATAACATGTTCTTCGCCACTAATGTTGCTCCCTCTTATGCT
CCGGCAGGAAAGGCACTGGTTTCTGTGTCGCTTGTGGGGCTATATGGTGACGTGGCGGAT
GAGGATTTGGTGGATCAGGTCGTGAAGGAGCTTTCGGGCTGGTTCGGGCAGTCGGTAGTT
GGGTCTTGGAGTTACTTGAGAATGTACCGGATCGGGTTTGCCCAACCGAACCAATGCCCA
CCCACCAACTTGACGAAGAACCCGAAAATAAAACCAGGCTTGTATATTTGTGGAGATTAT
GTGACTAGTGCTACTTTTGATGGAGCTTTGGTTTCTGGCAAAAAAGCAGCAGAAGCTTTG
TTACAAGATAGAGCCTTGGTTACAGTATAG

Peptide Sequence

PEP ID

XP_016457385.1
PEP Infomation

PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Nicotiana tabacum]
Sequence

MPPCLCLPATHSLPSSNLLISTRHRFRLPKPPNASSQISLNSPLSNQTSPPQPKTTGVIV
IGGGLAGLAAATRLQADNVPFLLLEASDAVGGRVRSDVVDGYILDRGFQIFITGYPEARK
ILDYDALDLRKFYSGAQVYYGGRFNTVADPLRHFSDSLQSLTNPIGTVVDKLLIGLTRLK
VLTQGDDEILNAEEVTTIDLLKKIGFSDAILDRFFQPFFGGIFFDRELETTSRLFNFIFK
CLALGDNTLPAKGIAAIPEQLAAKLPSNSILLNSPVVSVDSESNSSSRIRVKLLNGEILE
SEFGIIVAVEEPEAVKLLAGKMAGEKTAEVRQPVRSTVCLYFSADQDKVPVRDPVLLLNG
TDKGIINNMFFATNVAPSYAPAGKALVSVSLVGLYGDVADEDLVDQVVKELSGWFGQSVV
GSWSYLRMYRIGFAQPNQCPPTNLTKNPKIKPGLYICGDYVTSATFDGALVSGKKAAEAL
LQDRALVTV

Transcript Sequence

Gene sequence data has not been registered.